papers and reports by year
2024
S. Shafique, S. Kong, C. Fowlkes, "CriSp: Leveraging Tread Depth Maps for Enhanced Crime-Scene Shoeprint Matching", ECCV, (Sept. 2024) arXiv:2404.16972K. Kim, C. Fowlkes, R. Fox, "Make the Pertinent Salient: Task-Relevant Reconstruction for Visual Control with Distraction", TAFM Workshop at Reinforcement Learning Conference (RLC), (August 2024) [pdf]
Y. Zhao, H. Ma, S. Kong, C. Fowlkes, "Instance Tracking in 3D Scenes from Egocentric Videos", CVPR, (June 2024) arXiv:2312.04117 [pdf]
2023
Y. Dukler, A. Achille, H. Yang, B. Bowman, V. Vivek, L. Zancato, A. Ravichandran, C. Fowlkes, A. Swaminathan, S. Soatto, "Your representations are in the network: composable and parallel adaptation for large scale models", NeurIPS, (Dec. 2023) [pdf]H. Li, C. Fowlkes, H. Yang, O. Dabeer, Z. Tu, S. Soatto, "Guided recommendation for model fine-tuning", CVPR, (June 2023) [pdf]
S. Shafique, B. Kong, S. Kong, C. Fowlkes, "Creating a Forensic Database of Shoeprints from Online Shoe Tread Photos", WACV (Jan. 2023) arXiv:2205.02361
Y. Zhao, C. Barnes, Y. Zhou, E. Shechtman, S. Amirghodsi, C. Fowlkes, "GeoFill: Reference-Based Image Inpainting of Scenes with Better Geometric Understanding", WACV (Jan. 2023) arXiv:2201.08131
2022
C. Zhu, P. Rajendran, P. Hanna, I. Efimov, G. Salama, C. Fowlkes, K. Shivkumar, "High resolution structure-function mapping of intact hearts reveals altered sympathetic control of infarct border zones", JCI Insight, (2022), 7(3):e153913. 10.1172/jci.insight.153913S. Punyasena, D. Haselhorst, S. kong, C. Fowlkes, J. Moreno, "Automated identification of diverse Neotropical pollen samples using convolutional neural networks", Methods in Ecology and Evolution, (June 2022). doi:10.1111/2041-210X.13917
Z. Wang, J. Yang, C. Fowlkes, "The Best of Both Worlds: Combining Model-Based and Non-parametric Approaches for 3D Human Body Estimation", CVPR-W ABAW, (June 2022), arXiv:2205.00508
M. Wallingford, H. Li, A. Achille, A. Ravichandran, C. Fowlkes, R. Bhotika, S. Soatto, "Task Adaptive Parameter Sharing for Multi-Task Learning", CVPR, (June 2022), arXiv:2203.16708
Z. Wang, H. Chen, X. Li, C. Liu, Y. Xiong, J. Tighe, C. Fowlkes, "SSCAP: Self-supervised Co-occurence Action Parsing for Unsupervised Temporal Action Segmentation", WACV, (Jan 2022) arXiv:2105.14158
2021
Z. Li, A. Ravichandran, C. Fowlkes, M. Polito, R. Bhotika, S. Soatto "Representation Consolidation for Training Expert Students", Technical Report (July 2021), arXiv:2107.08039Y. Zhao, S. Kong, C. Fowlkes, "Camera Pose Matters: Improving Depth Prediction by Mitigating Pose Distribution Bias", CVPR, (June 2021) arXiv:2007.03887
Z. Cai, A. Ravichandran, S. Maji, C. Fowlkes, Z. Tu, S. Soatto "Exponential Moving Average Normalization for Self-supervised and Semi-supervised Learning", CVPR, (June 2021) arXiv:2101.08482
K. Nottingham, L. Liang, D. Shin, C. Fowlkes, R. Fox, S. Singh, "Modular Framework for Visuomotor Language Grounding", CVPR Embodied AI Workshop, (June 2021), arXiv:2109.02161
A. Deshpande, A. Achille, A. Ravichandran, H. Li, L. Zancato, C. Fowlkes, R. Bhotika, S. Soatto, P. Perona "A linearized framework and a new benchmark for model selection for fine-tuning", Technical Report, (Feb 2021) arXiv:2102.00084
2020
I. Romero, S. Kong, C. Fowlkes, C. Jaramillo, M. Urban, F. Oboh-Ikuenobe, C. D'Apolito, S. Punyasena, "Improving the taxonomy of fossil pollen using convolutional neural networks and superresolution microscopy", Proc. of the National Academy of Sciences (PNAS) Oct 2020, 202007324. DOI:10.1073/pnas.2007324117L. Wang, C. Challis, S. Li, C. Fowlkes, S. Kumar, P-Q Yuan, Y. Taché, "Multicolor sparse viral labeling and 3D digital tracing of enteric plexus in mouse proximal colon using a novel adeno‐associated virus capsid", Neurogastroenterology & Motility, Oct 2020, 00:e14014.
Z. Wang, D. Shin, C. Fowlkes, "Predicting Camera Viewpoint Improves Cross-dataset Generalization for 3D Human Pose Estimation", 3DPW workshop, ECCV, (August 2020). arXiv:2004.03143
Z. Fang, S. Kong, Z. Wang, C. Fowlkes, Y. Yang, "Weak Supervision and Referring Attention for Temporal-Textual Association Learning", Technical Report, (June 2020) arXiv:2006.11747
H. Kashyap, C. Fowlkes, J. Krichmar, "Sparse Representations for Object and Ego-motion Estimation in Dynamic Scenes", to appear, IEEE TNNLS, 10.1109/TNNLS.2020.3006467 [pdf] arXiv:1903.03731
L. Wang, S. Kong, Z. Pincus, C. Fowlkes, "Celeganser: Automated Analysis of Nematode Morphology and Age", CVPR CVMI Workshop, (June 2020) [project] arXiv:2005.04884
Y. Zhao, S. Kong, D. Shin, C. Fowlkes, "Domain Decluttering: Simplifying Images to Mitigate Synthetic-Real Domain Shift and Improve Depth Estimation", CVPR, (June 2020) [pdf] [project] arXiv:2002.12114
Y. Zhao, Y. Tian, C. Fowlkes, W. Shen, A. Yuille, "Resisting Large Data Variations via Introspective Transformation Network", WACV, (March 2020). [pdf]
F. Zhou, S. Kong, C. Fowlkes, T. Chen, B. Lei "Fine-Grained Facial Expression Analysis Using Dimensional Emotion Model", Neurocomputing, (2020) arXiv:1805.01024
2019
C. Huh, K. Abdelaal, K. Salinas, D. Gu, J. Zeitoun, D. Velez, J. Peach, C. Fowlkes, S. Gandhi, "Long-term monocular deprivation during juvenile critical period disrupts binocular integration in mouse visual thalamus", Journal of Neuroscience, (November 2019), 10.1523/JNEUROSCI.1626-19.2019N. Hayatbini, B. Kong, K-l Hsu, P. Nguyen, S. Sorooshian, G. Stephens, C. Fowlkes, R. Nemani, "Conditional Generative Adversarial Networks (cGANs) for Near Real-Time Percipitation Estimation from Multispectral GOES 16 Satellite Imagery", Remote Sensing 11:19,(Sept. 2019) [pdf]
D. Shin, Z. Ren, E. Sudderth, C. Fowlkes, "3D Scene Reconstruction with Multi-layer Depth and Epipolar Transformers", ICCV (Oct. 2019) [pdf] [project] arXiv:1902.06729
P. Nguyen, D. Ramanan, C. Fowlkes, "Weakly-supervised Action Localization with Background Modeling" ICCV (Oct. 2019) [pdf] arXiv:1908.06552
A. Achille, M. Lam, R. Tewari, A. Ravichandran, S. Maji, C. Fowlkes, S. Soatto, P. Perona, "Task2Vec: Task Embedding for Meta-Learning", ICCV (Oct. 2019) [pdf] arXiv:1902.03545
M. Lee, C. Fowlkes, "CeMNet: Self-supervised learning for accurate continuous ego-motion estimation", 3rd International Workshop on Visual Odometry and Computer Vision Applications Based on Location Clues, CVPR, (June 2019) [pdf] arXiv:1806.10309
Z. Fang, S. Kong, C. Fowlkes, Y. Yang "Modularized Textual Grounding for Counterfactual Resilience", CVPR, (June 2019) arXiv:1904.03589
Z. Wunderlich, C. Fowlkes, K. Eckenrode, M. Bragdon, A. Abiri, A. DePace "Quantitative comparison of the anterior-posterior patterning system in the embryos of five Drosophila species", G3: GENES, GENOMES, GENETICS 10.1534/g3.118.200953 (May 2019)
Z. Wang, L. Chen, S. Rathore, D. Shin, C. Fowlkes, "Geometric Pose Affordance : 3D Human Pose with Scene Constraints", (May 2019). arXiv:1905.07718
S. Kong, C. Fowlkes, "Multigrid Predictive Filter Flow for Unsupervised Learning on Videos", (April 2019). arXiv:1904.01693
P. Rajendran, R. Challis, C. Fowlkes, P. Hanna, J. Tompkins, M. Jordan, S. Hiyari, B. Gabris-Weber, A. Greenbaum, K. Chan, B. Deverman, H. Munzberg, J. Ardell, G. Salama, V. Gradinaru, K. Shivkumar, "Identification of peripheral neural circuits that regulate heart rate using optogenetic and viral vector strategies", Nature Communications 10:1944 (April 2019) bioRxiv preprint
S. Kong, C. Fowlkes, "Pixel-wise Attentional Gating for Scene Parsing", WACV, (Jan 2019). arXiv:1805.01556
B. Kong, J. Supancic, D. Ramanan, C. Fowlkes, "Cross-Domain Image Matching with Deep Feature Maps", IJCV, (2019). doi:10.1007/s11263-018-01143-3 [pdf]
2018
S. Kong, C. Fowlkes, "Image Reconstruction with Predictive Filter Flow", Technical Report (Nov. 2018) arXiv:1811.11482R. Muller, N. Abaid, J. Boreyko, C. Fowlkes, A. Goel, C. Grimm, S. Jung, B. Kennedy, C. Murphy, N. Cushing, J-P Han, "Biodiversifying Bioinspiration", Bioinspiration & Biomemetics 13(5):053001, 2018. [pdf]
P. Nguyen, D. Ramanan, C. Fowlkes "Active Testing: An Efficient and Robust Framework for Estimating Accuracy", ICML, (July 2018) [pdf]
D. Shin, C. Fowlkes, D. Hoiem, "Pixels, voxels, and views: A study of shape representations for single view 3D object shape prediction", CVPR, (June 2018) [pdf]
S. Kong, C. Fowlkes, "Recurrent Pixel Embedding for Instance Grouping", CVPR (June 2018) arXiv:1712.08273 [pdf]
S. Kong, C. Fowlkes, "Recurrent Scene Parsing with Perspective Understanding in the Loop", CVPR (June 2018) arXiv:1705.07238 [pdf]
Z. Wang, X. Liu, L. Chen, L. Wang, Y. Qiao, X. Xie, C. Fowlkes, "Structured Triplet Learning with POS-tag Guided Attention for Visual Question Answering", WACV, Lake Tahoe, NV (March 2018) [pdf]
2017
M. Lee, C. Fowlkes, "Spacetime Localization and Mapping", ICCV, Venice, (October 2017). [pdf]B. Kong, C. Fowlkes, "Energy-Based Spherical Sparse Coding", Technical Report, arXiv:1710.01820 [pdf]
B. Kong, J. Supancic, D. Ramanan, C. Fowlkes, "Cross-Domain Forensic Shoeprint Matching", BMVC, London, (Sept 2017). [pdf] *best industrial paper honourable mention*
S. Kong, C. Fowlkes, "Low-rank Bilinear Pooling for Fine-Grained Classification", CVPR, (July 2017). arXiv:1611.05109 [pdf]
R. Diaz, C. Fowlkes, "Cluster-wise Ratio Tests for Fast Camera Localization", Int. Workshop on Visual Odometry and Computer Vision Applications Base don Location Clues, CVPR, (July 2017). arXiv:1612.01689 [pdf] [code]
Z. Wang, L. Wang, Y. Wang, B. Zhang, Y. Qiao, C. Fowlkes, "Weakly Supervized PatchNets: Learning Aggregated Patch Descriptors for Scene Recognition", SUNw: Scene Understanding Workshop, CVPR, (July 2017) [pdf]
Z. Wang, X. Liu, L. Chen, L. Wang, Y. Qiao, X. Xie, C. Fowlkes, "Towards Good Practices for Visual Question Answering", VQA Challenge Workshop, CVPR, (July 2017)
S. Wang, S. Wolf, C. Fowlkes, J. Yarkony, "Tracking Objects with Higher Order Interactions using Delayed Column Generation", AISTATS, (April 2017). arXiv:1512.02413 [pdf]
2016
S. Wang, C. Fowlkes, "Learning Optimal Parameters for Multi-target Tracking with Contextual Interactions", IJCV, 122:484. DOI 10.1007/s11263-016-0960-z arXiv:1610.01394 [pdf]S. Kong, X. Shen, Z. Lin, R. Mech, C. Fowlkes, "Photo Aesthetics Ranking Network with Attributes and Content Adaptation", ECCV, Amsterdam, (Oct. 2016). arXiv:1606.01621 [pdf] [supplement]
G. Ghiasi, C. Fowlkes, "Laplacian Pyramid Reconstruction and Refinement for Semantic Segmentation", ECCV, Amsterdam, (Oct. 2016). arXiv:1605.02264 [pdf] [code]
S. Kong, S. Punyasena, C. Fowlkes, "Spatially Aware Dictionary Learning and Coding for Fossil Pollen Identiifcation", CVMI Workshop, Los Vegas, NV, (July 2016). arXiv:1605.00775 [pdf]
P. Nguyen, G. Rogez, C. Fowlkes, D. Ramanan, "The Open World of Micro-Videos", Technical Report, (March 2016). arXiv:1603.09439 [pdf]
P. Nguyen, G. Rogez, C. Fowlkes, D. Ramanan, "The Open World of Micro-Videos", BigVision Workshop, Los Vegas, NV (July 2016). [pdf]
A. Cinquin, M. Chiang, A. Paz, S. Hallman, I. Vysniauskaite, O. Yuan, C. Fowlkes, O. Cinquin, "Intermittent stem cell cycling balances self-renewal and senescence of the C. elegans germ line", PLoS Genetics (2016) DOI:10.1371/journal.pgen.1005985. [pdf]
D. Tcheng, A. Nayak, C. Fowlkes, S. Punyasena, "Visual recognition software for binary classification and its application to spruce pollen identification" PLoS ONE, 11(2): e0148879. doi:10.1371/journal.pone.0148879 (2016). [pdf]
R. Diaz, M. Lee, J. Schubert, C. Fowlkes, "Lifting GIS Maps into Strong Geometric Context" WACV Lake Placid, NY (March 2016). arXiv:1507.03698 [pdf]
2015
C. McCusker, A. Athippozhy, C. Diaz-Castillo, C. Fowlkes, D. Gardiner, S. Voss, "Positional Plasticity in Regenerating Amybstoma mexicanum Limbs Is Associated With Cell Proliferation and Pathways of Cellular Differentiation", BMC Developmental Biology, 15:45, DOI 10.1186/s12861-015-0095-4 (2015). [pdf]M. Chiang, S. Hallman, A. Cinquin, N. Reyes de Mochel, A. Paz, S. Kawauchi, A. Calof, K. Cho, C. Fowlkes, O. Cinquin, "Analysis of in vivo single cell behavior by high throughput, human-in-the-loop segmentation of three-dimensional images", BMC Bioinformatics 2015, 16:397 doi:10.1186/s12859-015-0814-7. [pdf]
J. Yarkony, C. Fowlkes, "Planar Ultrametrics for Image Segmentation", Proc. of , NIPS, Dec. 2015. arXiv:1507.02407 [pdf]
J. B. Treweek, K. Chan, N. Flytzanis, B. Yang, B. Deverman, A. Greenbaum, A. Lignell, C. Xiao, L. Cai, M. Ladinsky, P. Bjorkman, C. Fowlkes, V. Gradinaru "Whole-Body Tissue Stabilization and Selective Extractions via Tissue-Hydrogel Hybrids for High Resolution Intact Circuit Mapping and Phenotyping", Nature Protocols, 10 (11), 1860-1896, (2015) DOI 10.1038/nprot.2015.122
S. Wang, C. Fowlkes, "Learning Optimal Parameters for Multi-target Tracking", BMVC 2015 [pdf]
G. Ghiasi, C. Fowlkes, "Using segmentation to predict the absence of occluded parts", BMVC 2015. [pdf] [data]
R. Diaz, M. Lee, J. Schubert, C. Fowlkes, "Lifting GIS Maps into Strong Geometric Context" Technical Report, July 2015 arXiv:1507.03698 [pdf]
G. Ghiasi, C. Fowlkes, "Occlusion Coherence: Detecting and Localizing Occluded Faces", Technical Report, June 2015 arXiv:1506.08347 [pdf] [code] [dataset]
X. Zhu, C. Vondrick, C. Fowlkes, D. Ramanan, "Do we need more training data?", IJCV, DOI 10.1007/s11263-015-0812-2, March 2015 arXiv:1503.01508 [pdf]
S. Hallman, C. Fowlkes, "Oriented Edge Forests for Boundary Detection", CVPR, Boston, MA, (June 2015).
arXiv:1412.2066 [pdf] [code]
M. Staller, C. Fowlkes, M. Bragdon, J. Estrada, Z. Wunderlich, A. DePace, "A gene expression atlas of a bicoid-depleted Drosophila embryo reveals early canalization of cell fate", Development 142, p. 587-596, (2015) [pdf]
2014
S. Wang, C. Fowlkes, "Learning Multi-target Tracking with Quadratic Object Interactions", Technical Report, arXiv:1412.2066 (Dec. 2014) [pdf]J. Yarkony, C. Zhang, C. Fowlkes, "Hierarchical Planar Correlation Clustering for Cell Segmentation", EMMCVPR, Hong Kong, (Jan 2015). [pdf]
G. Ghiasi, C. Fowlkes, "Occlusion Coherence: Localizing Occluded Faces with a Hierarchicial Deformable Part Model", CVPR, Columbus, OH, (June 2014). [pdf]
G. Ghiasi, Y. Yang, D. Ramanan, C. Fowlkes, "Parsing Occluded People", CVPR, Columbus, OH, (June 2014). [pdf]
B. Kong, C. Fowlkes, "Fast Convolutional Sparse Coding (FCSC)", UCI Technical Report, (May 2014) [pdf]
2013
A. Chen, E. Lee, R. Tu, K. Santiago, A. Grosberg, C. Fowlkes, M. Khine, "Integrated Platform for Functional Monitoring of Biomimetic Heart Sheets Derived From Human Pluripotent Stem Cells", Biomaterials 35(2):675-683, [pdf]L. Mander, M. Li, W. Mio, C. Fowlkes, S. Punyasena, "Classification of grass pollen through the quantitative analysis of surface ornamentation and texture", Proc. R. Soc. B. 2013 280 (1770) [pdf]
R. Díaz, S. Hallman, C. Fowlkes, "Detecting Dynamic Objects with Multi-View Background Subtraction", ICCV, Sydney, Australia (December 2013). [pdf]
B. Andres, J. Yarkony, B.S. Manjunath, S. Kirchhoff, E. Turetken, C. Fowlkes, H. Pfister, "Segmenting Planar Superpixel Adjacency Graphs w.r.t. non-planar Superpixel Affinity Graphs", EMMCVPR, Lund, Sweden, (Aug. 2013). [pdf][sup]
R. Díaz, S. Hallman, C. Fowlkes, "Multi-View Background Subtraction for Object Detection", Scene Understanding Workshop, Portland, OR, (June 2013).
H. Bae, C. Fowlkes, P. Chou, "Accurate Motion Deblurring using Camera Motion Tracking and Scene Depth", WACV, Clearwater Beach, Florida, (Jan. 2013). [pdf]
2012
H. Bae, C. Fowlkes, P. Chou, "Patch Mosaic for Fast Motion Deblurring", ACCV, Daejeon, Korea, (Nov. 2012). [pdf]X. Zhu, C. Vondrick, D. Ramanan, C. Fowlkes, "Do we need more training data or better models for object detection?", BMVC, Surrey, UK (Sept. 2012). [pdf]
J. Yarkony, A. Ihler, C. Fowlkes, "Fast Planar Correlation Clustering for Image Segmentation'', ECCV, Firenze, Italy (Oct. 2012). arXiv:1208.0378v1 [extended pdf]
D. Keator, J. Fallon, A. Lakatos, C. Fowlkes, S. Potkin, A. Ihler, "Feed-forward Hierarchical Model of the Ventral Visual Stream Applied to Functional Brain Image Classification", Human Brain Mapping 35(1), p. 38–52, 2012. [pdf]
H. Kim, J. Park, J. Byun, W. Poon, C. Cotman, C. Fowlkes, N. Jeon, "Quantitative analysis of axonal transport by using compartmentalized and surface micropatterned culture of neurons", ACS Chemical Neuroscience, 2012. [pdf]
2011
J. Hengenius, M. Gribskov, A. Rundell, C. Fowlkes, D. Umulis, "Analysis of Gap Gene Regulation in a 3D Organism-Scale Model of the Drosohpila melanogaster Embryo", PLoS ONE 6(11): e26797. doi:10.1371/journal.pone.0026797, 2011. [pdf][supplement]Y. Yang, S. Hallman, D. Ramanan, C. Fowlkes, "Layered Object Models for Image Segmentation", TPAMI, 34(9):1731-1743, 2011. [pdf]
A. Chen, D. Lieu, L. Freschauf, V. Lew, H. Sharma, J. Wang, D. Nguyen, I. Karakikes, R. Hajjar, A. Gopinathan, E. Botvinick, C. Fowlkes, R. Li, M. Khine, "Shrink-Film Configurable Multiscale Wrinkles for Functional Alignment of Human Embryonic Stem Cells and their Cardiac Derivatives", 10.1002/adma.201103463, Advanced Materials, 2011. [pdf]
C. Fowlkes, K. Eckenrode, M. Bragdon, M. Meyer, Z. Wunderlich, L. Simirenko, C. Hendriks, S. Keranen, C. Henreiquez, M. Biggin, M. Eisen, A. DePace, "A conserved developmental patterning network produces quantitatively different output in multiple species of Drosophila," PLoS Genetics, 7(10): e1002346, 2011. [pdf]
Y. Chen, A. Gelfand, C. Fowlkes, M. Welling, "Integrating Local Classifiers through Nonlinear Dynamics on Label Graphs with an Application to Image Segmentation", ICCV, Barcelona, Spain, (Nov. 2011) [pdf]
J. Yarkony, R. Morshed, A. Ihler, C. Fowlkes. "Tightening MRF Relaxations with Planar Subproblems", UAI, Barcelona, Spain (July 2011). [pdf] [NOTE: The original published version contained an erroroneous claim that was kindly pointed out by David Sontag. The one linked here is an updated version.]
J. Yarkony, A. Ihler, C. Fowlkes. "Planar Cycle Covering Graphs", UAI, Barcelona, Spain (July 2011). [pdf]
J. Yarkony, R. Morshed, A. Ihler, C. Fowlkes. "Planar Decompositions and Cycle Constraints", Workshop on Inference in Graphical Models with Structured Potentials, Colorado Springs, CO, (June 2011) [pdf]
J. Yarkony, A. Ihler, C. Fowlkes. "Planar Cycle Covering Graphs", Technical Report, arXiv:1104.1204v1, 2011 [pdf]
C. Desai, D. Ramanan, C. Fowlkes. "Discriminative models for multi-class object layout", 95(1), p. 1-12, International Journal of Computer Vision, 2011 [pdf]
Y. Bo, C. Fowlkes. "Shape-based Pedestrian Parsing", CVPR, Colorado Springs, CO, (June 2011) [pdf]
H. Pirsiavash, D. Ramanan, C. Fowlkes. "Globally-Optimal Greedy Algorithms for Tracking a Variable Number of Objects", CVPR, Colorado Springs, CO, (June 2011) [pdf]
J. Luna, J. Ciriza, M. Ojeda-Garcia, M. Kong, A. Herren, D. Lieu, R. Li, C. Fowlkes, M. Khine, K. McCloskey, "Multi-scale Biomimetic Topography for the Alignment of Neonatal and Embryonic Stem Cell-derived Heart Cells", Tissue Engineering: Part C , 17(5), p. 579-588 , 2011 [pdf]
P. Arbelaez, M. Maire, C. Fowlkes, J. Malik, "Contour Detection and Hierarchical Image Segmentation", TPAMI, 33(5), 2011 [pdf] [web page]
2010
S. Hallman, A. Skurikhin, C. Fowlkes. "Vehicle Detection on High-Resolution Commerical Satellite Imagery", Technical Report LA-UR-10-05877, Los Alamos National Laboratory, 2010A. Aswani, S. Keranen, J. Brown, C. Fowlkes, D. Knowles, M. Biggin, P. Bickel, C. Tomlin "Nonparametric identification of regulatory interactions from spatial and temporal gene expression data" BMC Bioinformatics,11:413, 2010. [pdf] *highly accessed*
D. Park, D. Ramanan, C. Fowlkes "Multiresolution models for object detection" ECCV, Crete, Greece, (Sept. 2010) [pdf]
J. Yarkony, C. Fowlkes, A. Ihler, "Covering Trees and Lower-bounds on Quadratic Assignment", CVPR, San Francisco, (June 2010) [pdf]
Y. Yang, S. Hallman, D. Ramanan, C. Fowlkes, "Layered Object Detection for Multi-Class Segmentation" CVPR, San Francisco, (June 2010) [pdf]
C. Desai, D. Ramanan, C. Fowlkes, "Discriminative models for static human-object interactions", CVPR Workshop on Structured Models in Computer Vision, San Fransisco, CA, (June 2010) [pdf]
J. Burge, C. Fowlkes, M. Banks, ``Natural-scene statistics predict how the figure-ground cue of convexity affects human depth perception'', Journal of Neuroscience, 30(21):7269-7280 [pdf] [supplement]
2009
H. Pirsiavash, D. Ramanan, C. Fowlkes. "Bilinear classifiers for visual recognition", NIPS, Vancouver, Canada, (Dec. 2009). [pdf]C. Desai, D. Ramanan, C. Fowlkes. "Discriminative models for multi-class object layout", ICCV Kyoto, Japan, (Sept. 2009). [pdf] *awarded the Marr Prize for best paper*
P. Arbelaez, M. Maire, C. Fowlkes and J. Malik. "From Contours to Regions: An Empirical Evaluation", CVPR Miami Beach, FL, (June 2009). [pdf] [code]. A fast GPU implementation here!
2008
M. Maire, P. Arbelaez, C. Fowlkes and J. Malik. "Using Contours to Detect and Localize Junctions in Natural Images", CVPR Anchorage, AK, (June 2008). [pdf]O. Rübel, G. Weber, M-Y Huang, E. Bethel, M. Biggin, C. Fowlkes C. Leungo Hendriks, S. Keränen, M. Eisen, D. Knowles, J. Malik, H. Hagen, B. Hamann, "Integrating Data Clustering and Visualization for the Analysis of 3D Gene Expression Data" IEEE Transactions on Computational Biology and Bioinformatics, 7(1):64-79, 2010. [pdf]
C. Fowlkes, C. Luengo Hendriks, S. Keränen, G. Weber, O. Rübel, M-Y Huang, S. Chatoor, L. Simirenko, A. DePace C. Henriquez, A. Beaton, R. Weiszmann, S. Celniker, B. Hamann, D. Knowles, M. Biggin, M. Eisen, J. Malik. "Constructing a quantitative spatio-temporal atlas of gene expression in the Drosophila blastoderm", Cell, 133(2), p. 364-374, 2008. [pdf] [supplement]
Reviews of this paper also appeared in Developmental Cell and Nature Methods.
The Drosophila blastoderm 3D gene expression atlas is online.
X. Ren, C. Fowlkes, J. Malik. "Learning Probabilistic Models for Contour Completion in Natural Images", IJCV, 77:47-63, 2008. [pdf]
2007
G. Weber, O. Rübel, M-Y Huang, A. DePace, C. Fowlkes, S. Keränen, C. Luengo Hendriks, H. Hagen, D. Knowles, J. Malik, M. Biggin, and B. Hamann "Visual Exploration of Three-dimensional Gene Expression Using Physical Views and Linked Abstract Views", IEEE Transactions on Computational Biology and Bioinformatics, 6(2):296-309, 2009. [pdf]
C. Fowlkes, D. Martin, J. Malik.
"Local Figure/Ground Cues are Valid for Natural Images"
Journal of Vision, 7(8):2, 1-9.
[pdf]
[dataset]
2006
C. Luengo-Hendriks, S. Keränen, C. Fowlkes, L. Simirenko, G. Weber, C. Henriquez, D. Kaszuba, B. Hamann, M. Eisen, J. Malik, D. Sudar, M. Biggin D. Knowles, "3D Morphology and Gene Expression in the Drosophila Blastoderm at Cellular Resolution I: Data Acquisition Pipeline", Genome Biology 2006, 7:R123 , [pdf] *highly accessed*S. Keränen, C. Fowlkes, C. Luengo Hendriks, D. Sudar, D. Knowles, J. Malik, M. Biggin, "3D Morphology and Gene Expression in the Drosophila Blastoderm at Cellular Resolution II: Dynamics", Genome Biology 2006, 7:R124, [pdf] *highly accessed*
C. Fowlkes, J. Malik. "Inferring nuclear movements from fixed material", Technical Report EECS-2006-142, EECS Department, University of California, Berkeley, (November 2006). [pdf]
X. Ren, C. Fowlkes, J. Malik. "Figure/Ground Assignment in Natural Images", ECCV, Graz, Austria, (May 2006). [pdf]
O. Rübel, G. Weber, S. Keränen, C. Fowlkes, C. Luengo Hendriks, N. Shah, M. Biggin, H. Hagen, D. Knowles, J. Malik, D. Sudar and B. Hamann. "PointCloudXplore: Visual Analysis of 3D Gene Expression Data Using Physical Views and Parallel Coordinates", EuroVIS, Lisbon, Portugal, (May 2006). [pdf]
2005
X. Ren, C. Fowlkes, J. Malik. "Cue Integration for Figure/Ground Labeling", NIPS, Vancouver, Canada, (Dec. 2005). [pdf]X. Ren, C. Fowlkes, J. Malik. "Scale-Invariant Contour Completion using Conditional Random Fields", ICCV, Beijing, China, (Oct. 2005). [pdf]
C. Fowlkes, C. Luengo Hendriks, S. Keränen, M. Biggin, D. Knowles, D. Sudar, J. Malik. "Registering Drosophila Embryos at Cellular Resolution to Build a Quantitative 3D Atlas of Gene Expression Patterns and Morphology", CSB 2005 Workshop on BioImage Data Minning and Informatics, Palo Alto, CA, (Aug. 2005). [pdf]
X. Ren, C. Fowlkes, J. Malik. "Mid-level Cues Improve Boundary Detection", Technical Report CSD-05-1382, Division of Computer Science, University of California, Berkeley, (March 2005). [pdf]
2004
C. Fowlkes "A Note on Planar Factor Graphs", (Oct. 2004). [pdf]C. Fowlkes, J. Malik. "How Much Does Globalization Help Segmentation?", Technical Report CSD-04-1340, Division of Computer Science, University of California, Berkeley, (July 2004). [pdf]
C. Fowlkes "Surveying Shape Spaces", survey article for Alan Weinstein's course on Reimannian Geometry [pdf]
D. Martin, C. Fowlkes, J. Malik. "Learning to Detect Natural Image Boundaries Using Local Brightness, Color and Texture Cues", TPAMI 26 (5) p.530-549 [pdf]
C. Fowlkes, S. Belongie, F. Chung, J. Malik. "Spectral Grouping Using The Nyström Method", TPAMI 26 (2) p.214-225 [pdf]
2003
C. Fowlkes, D. Martin, J. Malik. "Learning Affinity Functions for Image Segmentation: Combining Patch-based and Gradient-based Approaches", CVPR, Madison, WI, (June 2003). [pdf]2002
D. Martin, C. Fowlkes, J. Malik. "Learning to Detect Natural Image Boundaries Using Brightness and Texture", NIPS , Vancouver, (Dec 2002). [pdf]S. Belongie, C. Fowlkes, F. Chung, J. Malik. "Spectral Partitioning with Indefinite Kernels using the Nyström Extension", ECCV , Copenhagen, (May 2002). [pdf]
C. Fowlkes, Q. Shan, S. Belongie, J. Malik. "Extracting Global Structure from Gene Expression Profiles", in Methods of Microarray Data Analysis II, S. M. Lin and K. F. Johnson, editors. Kluwer Academic Publishers, 2002. [pdf]
2001 and before
C. Fowlkes, S. Belongie, J. Malik. "Efficient Spatiotemporal Grouping Using the Nyström Method", CVPR , Hawaii, (Dec. 2001). [pdf]D. Martin, C. Fowlkes, D. Tal, J. Malik. "A Database of Human Segmented Natural Images and its Application to Evaluating Segmentation Algorithms and Measuring Ecological Statistics", ICCV, Vancouver, (July 2001). [pdf] *awarded the Helmoltz Prize in 2015 for making a significant impact on the field of computer vision*
M.C. Burl, C. Fowlkes, J. Roden, "Mining for Image Content", SCI-ISAS '99 Session on Intelligent Data Mining and Knowledge Discovery, Orlando, FL, (Aug 1999) [pdf]
J. Roden, M.C. Burl, and C. Fowlkes, "The Diamond Eye Image Mining System", Demo for the Scientific and Statistical Database Management Conf., Cleveland, OH, (June 1999) [pdf]
M.C. Burl, C. Fowlkes, J. Roden, A. Stechert, and S. Muukhtar, "Diamond Eye: A distributed Architecture for Image Data Mining", SPIE Conference on Data Minning and Knowledge Discovery, Orlando, FL (Apr 1999) [pdf]
C. W. Fowlkes and C. C. Fowlkes "Passive Solar Contributions to Residential Ventilation", Conservation in Buildings: Northwest Perspective, Butte, MT (May 1985) [pdf]
erdös = 2